statistics - walking through two tables (matrices) matching columns and applying a function in R -


so have 2 matrices. lets name them controls , patients. each row sample, , each column concentration of protein. looks this:

        v1    v2    v3    v4     v5     v6    v7    v8    v9     v10    v11 sample1  1533.34  9.88  6.82 17.88  70.75 350.07 20.67 13.96 10.17  711.02 114.06 sample2  2311.30 12.74  6.82 17.88  80.71 505.96 34.36 19.66 18.70  863.70 181.43 sample3  1314.83 11.39 18.12 41.26 104.36 278.17 40.25 27.12 41.34 1100.00 160.83

this small subset, have more values. want compare matching table column. side question, correct use t-test in case, assuming data distributed? anyway. i've tried apply() function:

apply(controls,2,function(x) t.test(x, patients)$p.value)

and getting results. have doubts if used function correctly. matches 2 columns in 2 tables meant be? or used incorrectly?

edit oh yeah. incorrect. mean value column in second table stays same.

try

 mapply(function(x,y) t.test(x,y)$p.value,           as.data.frame(controls), as.data.frame(patients))  #       v1        v2        v3        v4        v5        v6        v7        v8   #0.8481788 1.0000000 0.4605294 1.0000000 0.6436604 1.0000000    1.0000000 1.0000000   #       v9       v10       v11   #1.0000000 1.0000000 1.0000000

assuming "controls" , "patients" matrix

data

controls <- structure(c(1253, 2311.3, 1314.83, 9.88, 12.74, 11.39,  20.8,  6.82, 18.12, 17.88, 17.88, 41.26, 70.75, 53.5, 104.36, 350.07,  505.96, 278.17, 20.67, 34.36, 40.25, 13.96, 19.66, 27.12, 10.17,  18.7, 41.34, 711.02, 863.7, 1100, 114.06, 181.43, 160.83), .dim = c(3l,  11l), .dimnames = list(c("sample1", "sample2", "sample3"), c("v1",  "v2", "v3", "v4", "v5", "v6", "v7", "v8", "v9", "v10", "v11")))  patients <- structure(c(1533.34, 2311.3, 1314.83, 9.88, 12.74, 11.39,  6.82,  6.82, 18.12, 17.88, 17.88, 41.26, 70.75, 80.71, 104.36, 350.07,  505.96, 278.17, 20.67, 34.36, 40.25, 13.96, 19.66, 27.12, 10.17,  18.7, 41.34, 711.02, 863.7, 1100, 114.06, 181.43, 160.83), .dim = c(3l,  11l), .dimnames = list(c("sample1", "sample2", "sample3"), c("v1",  "v2", "v3", "v4", "v5", "v6", "v7", "v8", "v9", "v10", "v11")))

Comments

Post a Comment

Popular posts from this blog

asp.net mvc - SSO between MVCForum and Umbraco7 -

i need integrate sso between mvcforum (forum of company) , umbraco7 (manages cms company). however struggling shared authentication work. tried several ways suggested on other threads still not running expected. here did: 1. in mvcforum (forum.mywebsite.com) 1.1. machine key in web.xml: <machinekey validationkey="the same key umbraco7" decryptionkey="the same key umbraco7" validation="sha1" decryption="aes" /> 1.2. authenticate forms in web.xml <forms name="my-sso-auth" protection="all" path="/" timeout="43200" domain="forum.mywebsite.com" loginurl="/members/logon" enablecrossappredirects="true" /> 2. in umbraco7 (news.mywebsite.com) 2.1. machine key in web.xml: <machinekey validationkey="the same key mvcforum" decryptionkey="the same key mvcforum" validation="sha1" decryption="aes" /> 2.2. a
Read more

Python Tkinter keyboard using bind -

i have problem using bind option can click button in keyboard, , call function once key pressed. tried taking other codes have similar purpose , saw i'm doing pretty same, though still have problem must've missed. thankful if me this. here's code: # -*- coding: utf-8 -*- #imports tkinter import * pil import imagetk, image import time import tkmessagebox #===========================================================================================================================================# #tkinter class class app(frame): def __init__(self, master=none): frame.__init__(self, master) self.pack() #===========================================================================================================================================# #game pieces classes class board: def __init__(self, rows = 7, columns = 6, picture_height = none, picture_width = none): self.rows = rows self.columns = columns self.picture
Read more

ubuntu - Selenium Node Not Connecting to Hub, Not Opening Port -

i'm trying set demo selenium grid. have digital ocean ubuntu 14.02 droplet. (i have 2 , tried set using 2 different machines got nowhere.) i'm trying run hub , node both locally. here input both hub, node, , nmap results. https://gist.github.com/mekhami/d5bbecca5ff0de9d2dc9 so, node starting tcp connection reset , port it's supposed operate on closed. i have had no luck in number of different options , configurations work. but... of course, worked randomly once. don't know why, don't know did, know 1 brief moment, node connected , saw on grid console. tried run test , went down again , i've never seen come up. please let me know more information can provide. update: randomly came online again. don't know happened, might related timeout or time_wait or going on. this because vm/server not have enough entropy available. to resolve problem, install haveged (or other similar things). the instructions of how install haveged on ubu
Read more